PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00695.1.p
Common NameLOC105975548, MIMGU_mgv1a010320mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 317aa    MW: 35842.9 Da    PI: 9.2367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00695.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.7e-29158217159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++v+ tYegeHnh+
  Migut.I00695.1.p 158 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSIEDQSIVVATYEGEHNHH 217
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28147218IPR003657WRKY domain
PROSITE profilePS5081124.994153219IPR003657WRKY domain
SuperFamilySSF1182901.31E-24155218IPR003657WRKY domain
SMARTSM007741.5E-32158218IPR003657WRKY domain
PfamPF031061.1E-23159217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFTSLLNTS LDLNYNPQRI FDEPDFRKQE ADRRNHHHIA TVSEERGALM EELSRVSAEN  60
KKLKEELTAT CENYTELKNQ LIKYTTTNKN TQSPKRRIEA VIRNNSIDNV TDNIITNGNS  120
ESSSSEEDSS KKPREELIKA KISRVQIRTE ASDTSLIVKD GYQWRKYGQK VTRDNPSPRA  180
YFKCSFAPTC PVKKKVQRSI EDQSIVVATY EGEHNHHHHQ PQPASKLEAS STTNRSSPLG  240
NAVSTAGSTI TLDLTKRKQS PEESRNVRGR VEAPELQQYF VEQMASTLTK DPSFKAALAA  300
AISGKFLQQN NQTEKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181572161371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856201.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-86WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A022PZH00.0A0A022PZH0_ERYGU; Uncharacterized protein
STRINGPOPTR_0001s03620.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-83WRKY DNA-binding protein 40